Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015874938.1_cds_XP_016435660.1_31597
CDS Infomation

[gene=LOC107761883] [db_xref=GeneID:107761883] [protein=homeobox-leucine zipper protein ROC8-like] [protein_id=XP_016435660.1] [location=join(498..610,1469..1586,4815..5006,5988..6506,6970..7062,7768..7977,9087..9261,10264..10532,11498..11587,12272..12658)] [gbkey=CDS]
Sequence

ATGGCTGATTCTGGGAATGAACAAATTGGAGAATCCTCAAGCTCTAGAAAAAGATCAAGG
AGGCAGAAGCTGTGTAACAGACATTCTGTGGAACAAATTCAGCAGCTTGAAACATATTTC
AAGGAATGTCCACATCCAGATGAGAACCAGCGACGCAAACTGAGTAGGGAAATAGGGCTT
GATCCTAAGCAAATCAAGTTTTGGTTTCAAAACAAAAGGACACAAACAAAGGCACTAAGT
GAGAGAGCAGACAACAATATTCTTCGAACAGAAAATGAAAGATTTCATTGTGAGAATATG
GCAATGAGAGAGGCACTGAAAAATATTATTTGCCCACACTGTGATGGTCCACCCCCTGGA
GAAGAAGAAAGAAAACGTAATTTGGAAAAAATGAAAATGGCAAATCAACGATTGAGAGAT
GAGCATGAAAGAATATCTAATTTAATCTCCAGTTTTGTGGGAAGGTCATTTGCAATGACT
TCACAATTAGCACCACAAAATACTGTTGGATCATTATCAAGTTCATCTGATGAAAGTTTG
GTTAGCCAAAATATAGTTGGTTCTCCCATTGAAAATCAACTAAATAATGTTCGAGGAAAT
TCAACAGCTAATATTCCACCGCGGCCGTTACCATCACCACCACCACCACCATCAATAATT
CAAGAAAACGAAGAAATTCGTGTTGACCGAGAAAAATCATTAATATTTGGGAGTGTTATT
AGTGCAACAGATGAAATTGTGGAGCTTTTGCAAATGAATGAACCAATTTGGATTAAGTCA
CAAATTGATGGGAGATATTTTATTTATCGTGATAGTTATGAAAAGATTTATCCAAAGCCA
AATCAACCTTATAAATCATCTGCTGCTCGTATTGAATCATCAAAGGAATCTGGAGTTGTG
ACAATGACTGCAATTGAGCTGATTCAAATATTTCTTGATCCAGTCAGATATATGAACATG
TTTCCTACTATTGTCACAAAAGCTAGGACAATTGAAGTTGTTGATACTGAGAATTTCGGA
GGTTCTGTACAATTGATGTATGAAAAGTTACATATTCTATCTCCTCTTGTGGGAGCAAGA
GATTTTTTCTTCATTCGTTGTTGTCGACAACTTGATCCAACAACATGGACAATGGTTGAT
GTTTCATATGATAACTTAAGAGAAATTCAAAGTGGTGGACCTTCTCAGACATGGAAGTTT
CCTTCTGGTTGTGTTATTCAAGATTTGGGCAATGGGAAAAGTATGGTTACTTGGCTTGAG
CATGTTCATGTGGATGACAAAACTCATACTAATCGTCTCTATAGAGATTTAGTGTGTGGT
CGTCAAACATTTGGAGCTAAGAGATGGATAATTAGTCTTCAAAGGATGTCTGAGAGACAC
AATTTTGCAATGGGTGCAAACAATCATGATTTAGAAGGAGTGATTGGTGCACTAGAAGGA
AAGCAAAATGTCATGCAAATATCTCAAAGGATGGTGAAGAGTTTTTGTGAAATACTAAGT
ATGGGAGATAGATTAGATTTCCCTACTTCATCAGAGATGACAAATAGTGGAGTTCGAGTT
TCATTTAGAAAAAATGAAGATATAAGTCAACCAAAAGGCTTGATTGTTACTGCTGCTACT
TCCCTATGGCTTCCTCTTTCATTTGATACTGTTTTTAATTTCTTCAAAGATGACAAGACA
AGACCTCAGTGGGATGTTTTAACCAATGGGAATGCTGTGGGTGAGTTAGCCCAAATACCA
ACAGGATTTTTTCCTGGAAATTGTATTTCAATAATTCAGCCTTATGTGCCAAAGGAGAAC
AACATGTTATTGCTTCAAGAAACCAATATTGATCCAATGGGAGCCTTTATAATCTATGCA
CCAATAGATTTACCAACAGTTACTTCAATTATCAATGGAGCAGACACCACCCAAATTCCC
ATATTGCCCTCTGGTTTCATCATAAGTCCTGATGGTCGTCTTGCCGCGGATAGGGACAGT
AATGGAATTTCACAAACCGGTTCGCTGTTGACTGTGGCTTTTCAAATATTGGTTTCTGCC
AATAATAATAATAATAATAATAATTTAATTTCCAAGCAGGAAAATATGGAGGCAGTGGCT
AATGTGCATACACTTTTGAGCTCTACAGTTCAAAAGATCAAAGTTGCATTGGACTGCGCT
GATTAA

Peptide Sequence

PEP ID

XP_016435660.1
PEP Infomation

PREDICTED: homeobox-leucine zipper protein ROC8-like [Nicotiana tabacum]
Sequence

MADSGNEQIGESSSSRKRSRRQKLCNRHSVEQIQQLETYFKECPHPDENQRRKLSREIGL
DPKQIKFWFQNKRTQTKALSERADNNILRTENERFHCENMAMREALKNIICPHCDGPPPG
EEERKRNLEKMKMANQRLRDEHERISNLISSFVGRSFAMTSQLAPQNTVGSLSSSSDESL
VSQNIVGSPIENQLNNVRGNSTANIPPRPLPSPPPPPSIIQENEEIRVDREKSLIFGSVI
SATDEIVELLQMNEPIWIKSQIDGRYFIYRDSYEKIYPKPNQPYKSSAARIESSKESGVV
TMTAIELIQIFLDPVRYMNMFPTIVTKARTIEVVDTENFGGSVQLMYEKLHILSPLVGAR
DFFFIRCCRQLDPTTWTMVDVSYDNLREIQSGGPSQTWKFPSGCVIQDLGNGKSMVTWLE
HVHVDDKTHTNRLYRDLVCGRQTFGAKRWIISLQRMSERHNFAMGANNHDLEGVIGALEG
KQNVMQISQRMVKSFCEILSMGDRLDFPTSSEMTNSGVRVSFRKNEDISQPKGLIVTAAT
SLWLPLSFDTVFNFFKDDKTRPQWDVLTNGNAVGELAQIPTGFFPGNCISIIQPYVPKEN
NMLLLQETNIDPMGAFIIYAPIDLPTVTSIINGADTTQIPILPSGFIISPDGRLAADRDS
NGISQTGSLLTVAFQILVSANNNNNNNNLISKQENMEAVANVHTLLSSTVQKIKVALDCA
D

Transcript Sequence

Gene sequence data has not been registered.